IL_4Y1N_004

3D structure

PDB id

4Y1N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGGAAU*AGC

Length

10 nucleotides

Bulged bases

4Y1N|1|A|A|134, 4Y1N|1|A|A|137, 4Y1N|1|A|A|138

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y1N|1|A|G|133
4Y1N|1|A|A|134
4Y1N|1|A|G|135
4Y1N|1|A|G|136
4Y1N|1|A|A|137
4Y1N|1|A|A|138
4Y1N|1|A|U|146
*
4Y1N|1|A|A|228
4Y1N|1|A|G|229
4Y1N|1|A|C|230

Current chains

Chain A

group II intron, domain 1

Nearby chains