IL_4Y4P_009

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCU,AGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_009 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1813

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4Y4P|1|1A|C|294
4Y4P|1|1A|C|295
4Y4P|1|1A|U|296
*
4Y4P|1|1A|A|388
4Y4P|1|1A|G|389
4Y4P|1|1A|G|390

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains