IL_4Y4P_025

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4Y4P|1|1A|G|977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_025 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.0578

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4Y4P|1|1A|C|891
4Y4P|1|1A|G|892
4Y4P|1|1A|C|893
*
4Y4P|1|1A|G|976
4Y4P|1|1A|G|977
4Y4P|1|1A|A|978
4Y4P|1|1A|G|979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30