IL_4Y4P_031
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GCUAGGG*CCAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y4P_031 not in the Motif Atlas
- Homologous match to IL_9DFE_030
- Geometric discrepancy: 0.3101
- The information below is about IL_9DFE_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4Y4P|1|1A|G|922
4Y4P|1|1A|C|923
4Y4P|1|1A|U|924
4Y4P|1|1A|A|925
4Y4P|1|1A|G|926
4Y4P|1|1A|G|927
4Y4P|1|1A|G|928
*
4Y4P|1|1A|C|943
4Y4P|1|1A|C|944
4Y4P|1|1A|A|945
4Y4P|1|1A|A|946
4Y4P|1|1A|A|947
4Y4P|1|1A|C|948
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
- Chain 1w
- Transfer RNA; tRNA
Coloring options: