IL_4Y4P_044

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4Y4P|1|1A|A|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_044 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.3146

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|1A|G|1133
4Y4P|1|1A|A|1134
4Y4P|1|1A|G|1135
4Y4P|1|1A|U|1136
4Y4P|1|1A|G|1137
*
4Y4P|1|1A|C|1146
4Y4P|1|1A|U|1147
4Y4P|1|1A|C|1148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36