IL_4Y4P_216

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4Y4P|1|2A|U|1142, 4Y4P|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_216 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1099

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4Y4P|1|2A|C|1018
4Y4P|1|2A|U|1019
4Y4P|1|2A|A|1020
4Y4P|1|2A|A|1021
4Y4P|1|2A|G|1022
4Y4P|1|2A|U|1023
4Y4P|1|2A|G|1024
*
4Y4P|1|2A|C|1140
4Y4P|1|2A|U|1141
4Y4P|1|2A|U|1142
4Y4P|1|2A|A|1142|||A
4Y4P|1|2A|A|1143
4Y4P|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2N

50S ribosomal protein L13