IL_4Y4P_351
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4Y4P_351 not in the Motif Atlas
- Homologous match to IL_4LFB_058
- Geometric discrepancy: 0.2368
- The information below is about IL_4LFB_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Y4P|1|2a|G|1405
4Y4P|1|2a|U|1406
4Y4P|1|2a|5MC|1407
4Y4P|1|2a|A|1408
4Y4P|1|2a|C|1409
*
4Y4P|1|2a|G|1491
4Y4P|1|2a|A|1492
4Y4P|1|2a|A|1493
4Y4P|1|2a|G|1494
4Y4P|1|2a|U|1495
4Y4P|1|2a|C|1496
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2l
- 30S ribosomal protein S12
- Chain 2m
- 30S ribosomal protein S13
- Chain 2v
- mRNA
- Chain 2w
- Transfer RNA; tRNA
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