IL_4Y4P_359

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_359 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0486

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4Y4P|1|1A|G|1713
4Y4P|1|1A|G|1714
4Y4P|1|1A|A|1715
4Y4P|1|1A|A|1716
4Y4P|1|1A|C|1717
4Y4P|1|1A|U|1718
4Y4P|1|1A|C|1719
4Y4P|1|1A|U|1720
4Y4P|1|1A|G|1721
*
4Y4P|1|1A|C|2012
4Y4P|1|1A|U|2013
4Y4P|1|1A|G|2014
4Y4P|1|1A|U|2015
4Y4P|1|1A|C|2016

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14