IL_4Y4P_373

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGAUCU*AGGUUUG

Length

13 nucleotides

Bulged bases

4Y4P|1|2A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|2A|U|2457
4Y4P|1|2A|G|2458
4Y4P|1|2A|A|2459
4Y4P|1|2A|U|2460
4Y4P|1|2A|C|2461
4Y4P|1|2A|U|2462
*
4Y4P|1|2A|A|2488
4Y4P|1|2A|G|2489
4Y4P|1|2A|G|2490
4Y4P|1|2A|U|2491
4Y4P|1|2A|U|2492
4Y4P|1|2A|U|2493
4Y4P|1|2A|G|2494

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2w

Transfer RNA; tRNA