IL_4Y4P_383

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4Y4P|1|1A|U|2154, 4Y4P|1|1A|A|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4P_383 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4856

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4Y4P|1|1A|C|2151
4Y4P|1|1A|U|2152
4Y4P|1|1A|G|2153
4Y4P|1|1A|U|2154
4Y4P|1|1A|G|2155
4Y4P|1|1A|A|2156
4Y4P|1|1A|A|2157
4Y4P|1|1A|C|2158
*
4Y4P|1|1A|G|2177
4Y4P|1|1A|G|2178
4Y4P|1|1A|G|2179
4Y4P|1|1A|A|2180
4Y4P|1|1A|G|2181

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains