IL_4YBB_068

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

4YBB|1|BA|C|48, 4YBB|1|BA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_068 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4YBB|1|BA|C|47
4YBB|1|BA|C|48
4YBB|1|BA|U|49
4YBB|1|BA|A|50
4YBB|1|BA|A|51
4YBB|1|BA|C|52
*
4YBB|1|BA|G|359
4YBB|1|BA|G|360
4YBB|1|BA|G|361

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain DH

50S ribosomal protein L9