IL_4YBB_128

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_128 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.1252

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4YBB|1|BA|C|1303
4YBB|1|BA|G|1304
4YBB|1|BA|G|1305
4YBB|1|BA|A|1306
4YBB|1|BA|U|1307
4YBB|1|BA|U|1308
*
4YBB|1|BA|A|1329
4YBB|1|BA|U|1330
4YBB|1|BA|G|1331
4YBB|1|BA|A|1332
4YBB|1|BA|A|1333
4YBB|1|BA|G|1334

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13