IL_4YBB_147

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_147 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.1434

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4YBB|1|CA|C|274
4YBB|1|CA|C|275
4YBB|1|CA|U|276
4YBB|1|CA|G|277
4YBB|1|CA|A|278
4YBB|1|CA|A|279
4YBB|1|CA|U|280
4YBB|1|CA|C|281
*
4YBB|1|CA|G|359
4YBB|1|CA|U|360
4YBB|1|CA|G|361
4YBB|1|CA|A|362
4YBB|1|CA|G|363

Current chains

Chain CA

23S rRNA

Nearby chains