IL_4YBB_151

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4YBB|1|CA|A|504, 4YBB|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_151 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0703

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4YBB|1|CA|G|481
4YBB|1|CA|A|482
4YBB|1|CA|A|483
4YBB|1|CA|C|484
*
4YBB|1|CA|G|496
4YBB|1|CA|A|497
4YBB|1|CA|G|498
4YBB|1|CA|U|499
4YBB|1|CA|G|500
4YBB|1|CA|A|501
4YBB|1|CA|A|502
4YBB|1|CA|A|503
4YBB|1|CA|A|504
4YBB|1|CA|A|505
4YBB|1|CA|G|506
4YBB|1|CA|A|507
4YBB|1|CA|A|508
4YBB|1|CA|C|509

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24