IL_4YBB_216

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

4YBB|1|CA|A|1938, 4YBB|1|CA|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_216 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.0969

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4YBB|1|CA|C|1934
4YBB|1|CA|G|1935
4YBB|1|CA|A|1936
4YBB|1|CA|A|1937
4YBB|1|CA|A|1938
4YBB|1|CA|5MU|1939
4YBB|1|CA|U|1940
4YBB|1|CA|C|1941
4YBB|1|CA|C|1942
4YBB|1|CA|U|1943
4YBB|1|CA|U|1944
4YBB|1|CA|G|1945
*
4YBB|1|CA|C|1961
4YBB|1|CA|5MC|1962
4YBB|1|CA|U|1963
4YBB|1|CA|G|1964

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2