IL_4YBB_252

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_252 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0862

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4YBB|1|CA|C|2806
4YBB|1|CA|U|2807
4YBB|1|CA|G|2808
4YBB|1|CA|A|2809
4YBB|1|CA|A|2810
4YBB|1|CA|G|2811
*
4YBB|1|CA|C|2889
4YBB|1|CA|G|2890
4YBB|1|CA|U|2891
4YBB|1|CA|G|2892

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CT

50S ribosomal protein L22