IL_4YBB_348

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4YBB|1|DA|U|2131, 4YBB|1|DA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_348 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4YBB|1|DA|C|2129
4YBB|1|DA|U|2130
4YBB|1|DA|U|2131
4YBB|1|DA|U|2132
4YBB|1|DA|G|2133
4YBB|1|DA|A|2134
4YBB|1|DA|A|2135
4YBB|1|DA|G|2136
*
4YBB|1|DA|U|2155
4YBB|1|DA|G|2156
4YBB|1|DA|G|2157
4YBB|1|DA|A|2158
4YBB|1|DA|G|2159

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA