IL_4YBB_373

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_373 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0403

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4YBB|1|DA|G|2843
4YBB|1|DA|G|2844
4YBB|1|DA|U|2845
4YBB|1|DA|G|2846
*
4YBB|1|DA|C|2870
4YBB|1|DA|U|2871
4YBB|1|DA|A|2872
4YBB|1|DA|A|2873
4YBB|1|DA|C|2874

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DO

50S ribosomal protein L17

Chain DQ

50S ribosomal protein L19