IL_4YBB_404

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4YBB|1|DA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_404 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4YBB|1|DA|A|844
4YBB|1|DA|A|845
4YBB|1|DA|U|846
4YBB|1|DA|U|847
4YBB|1|DA|C|848
*
4YBB|1|DA|G|930
4YBB|1|DA|U|931
4YBB|1|DA|U|932
4YBB|1|DA|A|933
4YBB|1|DA|U|934

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30