IL_4YBB_414

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUU

Length

37 nucleotides

Bulged bases

4YBB|1|DA|U|2111, 4YBB|1|DA|A|2114, 4YBB|1|DA|G|2115, 4YBB|1|DA|U|2118, 4YBB|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YBB|1|DA|A|2101
4YBB|1|DA|G|2102
4YBB|1|DA|C|2103
4YBB|1|DA|C|2104
4YBB|1|DA|U|2105
4YBB|1|DA|U|2106
4YBB|1|DA|G|2107
4YBB|1|DA|A|2108
4YBB|1|DA|U|2109
4YBB|1|DA|G|2110
4YBB|1|DA|U|2111
4YBB|1|DA|G|2112
4YBB|1|DA|U|2113
4YBB|1|DA|A|2114
4YBB|1|DA|G|2115
4YBB|1|DA|G|2116
4YBB|1|DA|A|2117
4YBB|1|DA|U|2118
4YBB|1|DA|A|2119
4YBB|1|DA|G|2120
4YBB|1|DA|G|2121
4YBB|1|DA|U|2122
4YBB|1|DA|G|2123
*
4YBB|1|DA|C|2175
4YBB|1|DA|A|2176
4YBB|1|DA|C|2177
4YBB|1|DA|C|2178
4YBB|1|DA|C|2179
4YBB|1|DA|U|2180
4YBB|1|DA|U|2181
4YBB|1|DA|U|2182
4YBB|1|DA|A|2183
4YBB|1|DA|A|2184
4YBB|1|DA|U|2185
4YBB|1|DA|G|2186
4YBB|1|DA|U|2187
4YBB|1|DA|U|2188

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DH

50S ribosomal protein L9