IL_4YBB_415

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

4YBB|1|DA|A|2126, 4YBB|1|DA|C|2161, 4YBB|1|DA|C|2164, 4YBB|1|DA|C|2165, 4YBB|1|DA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YBB_415 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4YBB|1|DA|G|2123
4YBB|1|DA|G|2124
4YBB|1|DA|G|2125
4YBB|1|DA|A|2126
4YBB|1|DA|G|2127
4YBB|1|DA|G|2128
*
4YBB|1|DA|C|2160
4YBB|1|DA|C|2161
4YBB|1|DA|G|2162
4YBB|1|DA|A|2163
4YBB|1|DA|C|2164
4YBB|1|DA|C|2165
4YBB|1|DA|U|2166
4YBB|1|DA|U|2167
4YBB|1|DA|G|2168
4YBB|1|DA|A|2169
4YBB|1|DA|A|2170
4YBB|1|DA|A|2171
4YBB|1|DA|U|2172
4YBB|1|DA|A|2173
4YBB|1|DA|C|2174
4YBB|1|DA|C|2175

Current chains

Chain DA

23S rRNA

Nearby chains