IL_4YHH_019

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AGGAAGAAGC*GUGUAAACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YHH|1|A|A|408
4YHH|1|A|G|409
4YHH|1|A|G|410
4YHH|1|A|A|411
4YHH|1|A|A|412
4YHH|1|A|G|413
4YHH|1|A|A|414
4YHH|1|A|A|415
4YHH|1|A|G|416
4YHH|1|A|C|417
*
4YHH|1|A|G|426
4YHH|1|A|U|427
4YHH|1|A|G|428
4YHH|1|A|U|429
4YHH|1|A|A|430
4YHH|1|A|A|431
4YHH|1|A|A|432
4YHH|1|A|C|433
4YHH|1|A|U|434

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4