IL_4YHH_030

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YHH_030 not in the Motif Atlas

Geometric match to IL_8C3A_059

Geometric discrepancy: 0.3251

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4YHH|1|A|C|656
4YHH|1|A|G|657
4YHH|1|A|G|658
*
4YHH|1|A|C|747
4YHH|1|A|C|748
4YHH|1|A|C|749
4YHH|1|A|G|750

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S15