IL_4YHH_036

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YHH_036 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1389

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4YHH|1|A|C|779
4YHH|1|A|A|780
4YHH|1|A|A|781
4YHH|1|A|A|782
4YHH|1|A|C|783
*
4YHH|1|A|G|799
4YHH|1|A|G|800
4YHH|1|A|U|801
4YHH|1|A|A|802
4YHH|1|A|G|803

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11