IL_4YHH_057
3D structure
- PDB id
- 4YHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CCACC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YHH_057 not in the Motif Atlas
- Geometric match to IL_5J7L_056
- Geometric discrepancy: 0.2632
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4YHH|1|A|C|1259
4YHH|1|A|C|1260
4YHH|1|A|A|1261
4YHH|1|A|C|1262
4YHH|1|A|C|1263
*
4YHH|1|A|G|1272
4YHH|1|A|G|1273
4YHH|1|A|G|1274
4YHH|1|A|A|1275
4YHH|1|A|G|1276
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain S
- 30S ribosomal protein S19
- Chain V
- 30S ribosomal protein Thx
Coloring options: