IL_4YHH_083
3D structure
- PDB id
- 4YHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- UGCAUGG*UCAGCAUG
- Length
- 15 nucleotides
- Bulged bases
- 4YHH|1|A|C|1054, 4YHH|1|A|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YHH_083 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1809
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4YHH|1|A|U|1052
4YHH|1|A|G|1053
4YHH|1|A|C|1054
4YHH|1|A|A|1055
4YHH|1|A|U|1056
4YHH|1|A|G|1057
4YHH|1|A|G|1058
*
4YHH|1|A|U|1199
4YHH|1|A|C|1200
4YHH|1|A|A|1201
4YHH|1|A|G|1202
4YHH|1|A|C|1203
4YHH|1|A|A|1204
4YHH|1|A|U|1205
4YHH|1|A|G|1206
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
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