IL_4YHH_087

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGGAG*UGACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YHH_087 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.3015

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4YHH|1|A|G|1415
4YHH|1|A|G|1416
4YHH|1|A|G|1417
4YHH|1|A|A|1418
4YHH|1|A|G|1419
*
4YHH|1|A|U|1481
4YHH|1|A|G|1482
4YHH|1|A|A|1483
4YHH|1|A|C|1484
4YHH|1|A|U|1485

Current chains

Chain A

16S ribosomal RNA

Nearby chains