IL_4YPB_017

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

4YPB|1|QA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_017 not in the Motif Atlas

Homologous match to IL_4LFB_016

Geometric discrepancy: 0.0718

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4YPB|1|QA|U|375
4YPB|1|QA|G|376
*
4YPB|1|QA|U|387
4YPB|1|QA|G|388
4YPB|1|QA|A|389

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16