IL_4YPB_063
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_063 not in the Motif Atlas
- Homologous match to IL_7RQB_001
- Geometric discrepancy: 0.0548
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4YPB|1|RA|G|24
4YPB|1|RA|U|25
4YPB|1|RA|G|26
4YPB|1|RA|G|27
4YPB|1|RA|A|28
4YPB|1|RA|U|29
4YPB|1|RA|G|30
*
4YPB|1|RA|C|510
4YPB|1|RA|U|511
4YPB|1|RA|G|512
4YPB|1|RA|A|513
4YPB|1|RA|A|514
4YPB|1|RA|A|515
4YPB|1|RA|C|516
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RU
- 50S ribosomal protein L20
- Chain RW
- 50S ribosomal protein L22
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