IL_4YPB_069
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_069 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.0582
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4YPB|1|RA|G|188
4YPB|1|RA|G|189
4YPB|1|RA|A|190
4YPB|1|RA|A|191
4YPB|1|RA|C|192
4YPB|1|RA|U|193
4YPB|1|RA|G|194
*
4YPB|1|RA|C|201
4YPB|1|RA|U|202
4YPB|1|RA|C|203
4YPB|1|RA|A|204
4YPB|1|RA|G|205
4YPB|1|RA|U|206
4YPB|1|RA|A|207
4YPB|1|RA|C|208
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R1
- 50S ribosomal protein L28
- Chain R7
- 50S ribosomal protein L34
- Chain R8
- 50S ribosomal protein L35
- Chain RP
- 50S ribosomal protein L15
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