IL_4YPB_072

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_072 not in the Motif Atlas

Geometric match to IL_4V9F_072

Geometric discrepancy: 0.3143

The information below is about IL_4V9F_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

4YPB|1|RA|G|272|||D
4YPB|1|RA|G|272|||E
4YPB|1|RA|C|272|||F
*
4YPB|1|RA|G|363|||D
4YPB|1|RA|U|363|||E
4YPB|1|RA|A|363|||F
4YPB|1|RA|C|364

Current chains

Chain RA

23S rRNA

Nearby chains