IL_4YPB_082

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_082 not in the Motif Atlas

Homologous match to IL_7RQB_017

Geometric discrepancy: 0.0524

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4YPB|1|RA|C|672
4YPB|1|RA|C|673
4YPB|1|RA|G|674
*
4YPB|1|RA|C|806
4YPB|1|RA|U|807
4YPB|1|RA|G|808

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15