3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
AUGAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YPB_113 not in the Motif Atlas
Homologous match to IL_7RQB_049
Geometric discrepancy: 0.047
The information below is about IL_7RQB_049
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4YPB|1|RA|A|1262
4YPB|1|RA|U|1263
4YPB|1|RA|G|1264
4YPB|1|RA|A|1265
4YPB|1|RA|G|1266
4YPB|1|RA|U|1267
4YPB|1|RA|A|1268
4YPB|1|RA|A|1269
*
4YPB|1|RA|U|2011
4YPB|1|RA|G|2012
4YPB|1|RA|A|2013
4YPB|1|RA|A|2014
4YPB|1|RA|A|2015
4YPB|1|RA|U|2016
4YPB|1|RA|U|2017

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RF
50S ribosomal protein L4
Chain RW
50S ribosomal protein L22

Coloring options:


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