IL_4YPB_114
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_114 not in the Motif Atlas
- Homologous match to IL_4WF9_049
- Geometric discrepancy: 0.1203
- The information below is about IL_4WF9_049
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
4YPB|1|RA|G|1310
4YPB|1|RA|G|1311
4YPB|1|RA|U|1312
4YPB|1|RA|U|1313
*
4YPB|1|RA|A|1603
4YPB|1|RA|C|1604
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RX
- 50S ribosomal protein L23
Coloring options: