3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YPB_114 not in the Motif Atlas
Homologous match to IL_4WF9_049
Geometric discrepancy: 0.1203
The information below is about IL_4WF9_049
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4YPB|1|RA|G|1310
4YPB|1|RA|G|1311
4YPB|1|RA|U|1312
4YPB|1|RA|U|1313
*
4YPB|1|RA|A|1603
4YPB|1|RA|C|1604

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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