IL_4YPB_132

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4YPB|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_132 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0605

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4YPB|1|RA|C|1686
4YPB|1|RA|G|1687
4YPB|1|RA|U|1688
4YPB|1|RA|A|1689
4YPB|1|RA|A|1690
4YPB|1|RA|C|1691
*
4YPB|1|RA|G|1696
4YPB|1|RA|G|1697
4YPB|1|RA|A|1698
4YPB|1|RA|G|1699
4YPB|1|RA|A|1700
4YPB|1|RA|A|1701
4YPB|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2