IL_4YPB_165

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4YPB|1|RA|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_165 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.4721

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4YPB|1|RA|C|2591
4YPB|1|RA|G|2592
*
4YPB|1|RA|C|2601
4YPB|1|RA|A|2602
4YPB|1|RA|G|2603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain RD

50S ribosomal protein L2