IL_4YPB_170

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4YPB|1|RA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_170 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.0979

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4YPB|1|RA|C|2695
4YPB|1|RA|U|2696
*
4YPB|1|RA|A|2711
4YPB|1|RA|U|2712
4YPB|1|RA|A|2712|||A
4YPB|1|RA|A|2713
4YPB|1|RA|G|2714

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RT

50S ribosomal protein L19