IL_4YPB_171

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4YPB|1|RA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_171 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0911

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4YPB|1|RA|G|2737
4YPB|1|RA|A|2738
4YPB|1|RA|U|2739
4YPB|1|RA|A|2740
4YPB|1|RA|A|2741
4YPB|1|RA|C|2742
*
4YPB|1|RA|G|2762
4YPB|1|RA|G|2763
4YPB|1|RA|A|2764
4YPB|1|RA|A|2765
4YPB|1|RA|G|2766
4YPB|1|RA|C|2767

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13