IL_4YPB_222
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 4YPB|1|XA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_222 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.0777
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
4YPB|1|XA|U|1052
4YPB|1|XA|G|1053
4YPB|1|XA|C|1054
4YPB|1|XA|A|1055
4YPB|1|XA|U|1056
*
4YPB|1|XA|A|1204
4YPB|1|XA|U|1205
4YPB|1|XA|G|1206
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XC
- 30S ribosomal protein S3
- Chain XJ
- 30S ribosomal protein S10
- Chain XN
- 30S ribosomal protein S14
- Chain XX
- messenger RNA
- Chain XY
- Host inhibition of growth B
Coloring options: