IL_4YPB_229
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_229 not in the Motif Atlas
- Geometric match to IL_4LFB_050
- Geometric discrepancy: 0.2504
- The information below is about IL_4LFB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4YPB|1|XA|C|1158
4YPB|1|XA|U|1159
4YPB|1|XA|G|1160
4YPB|1|XA|C|1161
*
4YPB|1|XA|G|1175
4YPB|1|XA|A|1176
4YPB|1|XA|G|1177
4YPB|1|XA|G|1178
4YPB|1|XA|A|1179
4YPB|1|XA|A|1180
4YPB|1|XA|G|1181
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain QJ
- 30S ribosomal protein S10
- Chain XB
- 30S ribosomal protein S2
- Chain XI
- 30S ribosomal protein S9
Coloring options: