IL_4YPB_243

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4YPB|1|XA|G|1442, 4YPB|1|XA|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_243 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.4926

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4YPB|1|XA|C|1440
4YPB|1|XA|G|1441
4YPB|1|XA|G|1442
4YPB|1|XA|G|1442|||A
4YPB|1|XA|A|1442|||B
4YPB|1|XA|G|1443
*
4YPB|1|XA|C|1459
4YPB|1|XA|A|1460
4YPB|1|XA|G|1461

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YT

50S ribosomal protein L19