IL_4YPB_274
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_274 not in the Motif Atlas
- Homologous match to IL_7RQB_029
- Geometric discrepancy: 0.0799
- The information below is about IL_7RQB_029
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.1
- Basepair signature
- cWW-tSW-cWS-cSH-tWH-R-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4YPB|1|YA|G|864
4YPB|1|YA|C|865
4YPB|1|YA|A|866
4YPB|1|YA|C|867
4YPB|1|YA|U|868
*
4YPB|1|YA|A|909
4YPB|1|YA|A|910
4YPB|1|YA|A|911
4YPB|1|YA|C|912
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
Coloring options: