IL_4YPB_286

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_286 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.137

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4YPB|1|YA|C|1041
4YPB|1|YA|G|1042
4YPB|1|YA|C|1043
*
4YPB|1|YA|G|1112
4YPB|1|YA|U|1113
4YPB|1|YA|G|1114

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6

Chain YZ

50S ribosomal protein L25