IL_4YPB_292

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4YPB|1|YA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_292 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.156

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4YPB|1|YA|C|1202
4YPB|1|YA|G|1203
4YPB|1|YA|A|1204
4YPB|1|YA|U|1205
4YPB|1|YA|G|1206
*
4YPB|1|YA|U|1240
4YPB|1|YA|A|1241
4YPB|1|YA|A|1242
4YPB|1|YA|G|1243

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15