IL_4YPB_332

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4YPB|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_332 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.436

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4YPB|1|YA|C|2129
4YPB|1|YA|U|2130
4YPB|1|YA|G|2131
4YPB|1|YA|U|2132
4YPB|1|YA|G|2133
4YPB|1|YA|A|2134
4YPB|1|YA|A|2135
4YPB|1|YA|C|2136
*
4YPB|1|YA|G|2155
4YPB|1|YA|G|2156
4YPB|1|YA|G|2157
4YPB|1|YA|A|2158
4YPB|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA