IL_4YPB_342

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4YPB|1|YA|G|2576, 4YPB|1|YA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_342 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0666

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4YPB|1|YA|C|2510
4YPB|1|YA|U|2511
4YPB|1|YA|C|2512
*
4YPB|1|YA|G|2574
4YPB|1|YA|C|2575
4YPB|1|YA|G|2576
4YPB|1|YA|A|2577
4YPB|1|YA|G|2578

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3