IL_4YPB_370

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

4YPB|1|XA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YPB|1|XA|G|1124
4YPB|1|XA|U|1125
4YPB|1|XA|U|1126
4YPB|1|XA|G|1127
4YPB|1|XA|C|1128
4YPB|1|XA|C|1129
4YPB|1|XA|A|1130
4YPB|1|XA|G|1131
4YPB|1|XA|C|1132
*
4YPB|1|XA|G|1142
4YPB|1|XA|G|1143
4YPB|1|XA|G|1144
4YPB|1|XA|C|1145
4YPB|1|XA|A|1146
4YPB|1|XA|C|1147
4YPB|1|XA|U|1148
4YPB|1|XA|C|1149

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10