IL_4YPB_378

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_378 not in the Motif Atlas

Geometric match to IL_8VTW_065

Geometric discrepancy: 0.1052

The information below is about IL_8VTW_065

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

4YPB|1|YA|G|1666
4YPB|1|YA|G|1667
4YPB|1|YA|A|1668
4YPB|1|YA|A|1669
*
4YPB|1|YA|U|1993
4YPB|1|YA|C|1994

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14