IL_4YPB_379
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_379 not in the Motif Atlas
- Geometric match to IL_8VTW_350
- Geometric discrepancy: 0.0679
- The information below is about IL_8VTW_350
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.2
- Basepair signature
- cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L
- Number of instances in this motif group
- 6
Unit IDs
4YPB|1|YA|G|1666
4YPB|1|YA|G|1667
4YPB|1|YA|A|1668
4YPB|1|YA|A|1669
4YPB|1|YA|C|1670
4YPB|1|YA|U|1671
4YPB|1|YA|C|1672
4YPB|1|YA|U|1673
4YPB|1|YA|G|1674
*
4YPB|1|YA|C|1990
4YPB|1|YA|U|1991
4YPB|1|YA|G|1992
4YPB|1|YA|U|1993
4YPB|1|YA|C|1994
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YE
- 50S ribosomal protein L3
- Chain YO
- 50S ribosomal protein L14
Coloring options: