IL_4YPB_384

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

4YPB|1|RA|A|2126, 4YPB|1|RA|U|2167, 4YPB|1|RA|G|2168, 4YPB|1|RA|A|2169, 4YPB|1|RA|A|2170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YPB|1|RA|G|2124
4YPB|1|RA|G|2125
4YPB|1|RA|A|2126
4YPB|1|RA|G|2127
*
4YPB|1|RA|C|2161
4YPB|1|RA|G|2162
4YPB|1|RA|C|2163
4YPB|1|RA|C|2164
4YPB|1|RA|G|2165
4YPB|1|RA|G|2166
4YPB|1|RA|U|2167
4YPB|1|RA|G|2168
4YPB|1|RA|A|2169
4YPB|1|RA|A|2170
4YPB|1|RA|A|2171
4YPB|1|RA|U|2172
4YPB|1|RA|A|2173
4YPB|1|RA|C|2174

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA